No, the 0606i has only a single set of charge leads - you would have to charge as a single lipo with the two wired together in series. The balance taps would have to be wired together as well, but in parallel if I have it right.

Hyperion DUO is made to do two lipos (or a123 or NiMh or NiCd or Pb) at once, but is a high end, deluxe charger, so its expensive ~$300. There are a few others, but I can't recall names atm.